Fig. 1
From: Construction of a comprehensive library of repeated sequences for the annotation of Citrus genomes
Schematic representation of the fine-grained method employed for de novo annotation of repeated sequences in the four ancestral Citrus taxa C. medica, C. micrantha, C. reticulata, and C. maxima. Results from the different bioinformatics tools REPET, EDTA, MUST, TAREAN, and CAULIFINDER were combined to produce a reference fine-grained annotation library of 2,883 consensus sequences representative of the diversity of all repeated sequences retrieved in Citrus. The numbers shown in the species-specific colored boxes indicate the number of consensus sequences and their genome coverage obtained using the TEannot pipeline. ECV: Endogenous Caulimovirid element; FLF: Full Length Fragment; PHG: Potential Host Gene; rDNA: ribosomal DNA; SSR: Simple Sequence Repeat; TE: Transposable Element